STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48041.1Iron-sulfur cluster-binding protein; [C] COG1145 Ferredoxin. (258 aa)    
Predicted Functional Partners:
EDZ48424.1
Molybdopterin oxidoreductase Fe4S4 domain family; [C] COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.999
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 0.997
dmsC
[R] COG3302 DMSO reductase anchor subunit.
 
 
 0.994
soxD_2
[C] COG3474 Cytochrome c2.
   
 0.984
soxX
Monoheme Cytochrome c SoxX.
  
 0.979
fdhA
Formate dehydrogenase, alpha subunit; [C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.974
tuf_1
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.948
tuf_2
[J] COG3276 Selenocysteine-specific translation elongation factor.
  
 
 0.948
EDZ45827.1
Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.
  
 0.940
RBY4I_102
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.920
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.