STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_327Divergent polysaccharide deacetylase family; [L] COG2812 DNA polymerase III, gamma/tau subunits. (522 aa)    
Predicted Functional Partners:
EDZ48450.1
Lipoprotein, putative; [M] COG3064 Membrane protein involved in colicin uptake.
  
     0.752
EDZ46468.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.740
EDZ46665.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.731
EDZ48310.1
Conserved hypothetical protein; [U] COG4961 Flp pilus assembly protein TadG.
  
     0.727
EDZ47055.1
Conserved hypothetical protein.
  
     0.717
EDZ46599.1
Conserved hypothetical protein.
  
     0.703
EDZ47550.1
Conserved hypothetical protein.
  
     0.695
EDZ48129.1
Conserved hypothetical protein.
  
     0.685
RBY4I_498
Lipoprotein, putative.
  
     0.685
EDZ47717.1
Conserved hypothetical protein; [T] COG2202 FOG: PAS/PAC domain.
  
    0.677
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.