STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48065.1Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein. (392 aa)    
Predicted Functional Partners:
EDZ47930.1
Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 0.996
EDZ46571.1
Outer membrane efflux protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 0.988
EDZ46250.1
Conserved hypothetical protein; [U] COG3210 Large exoproteins involved in heme utilization or adhesion.
 
  
 0.902
EDZ48071.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
 
 0.862
EDZ45003.1
RND efflux system, outer membrane lipoprotein, NodT family; [MU] COG1538 Outer membrane protein.
  
 0.835
copB
Copper tolerance protein; [MU] COG1538 Outer membrane protein.
  
 0.805
EDZ48300.1
OmpA/MotB; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 
 0.703
RBY4I_732
Serralysin; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
    0.685
EDZ48710.1
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
 0.680
EDZ46028.1
Efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.679
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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