STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48081.1Peptidase M20; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases. (463 aa)    
Predicted Functional Partners:
EDZ46593.1
Glutamine amidotransferase class-II domain protein; [R] COG0121 Predicted glutamine amidotransferase.
 
      0.879
EDZ48277.1
Dihydroorotate dehydrogenase family protein; [C] COG1145 Ferredoxin.
  
 0.735
RBY4I_172
Polysaccharide deacetylase; [S] COG3195 Uncharacterized protein conserved in bacteria.
    
 0.702
EDZ47248.1
Hypothetical protein.
       0.571
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 
 0.525
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 0.507
EDZ46955.1
[N] COG1536 Flagellar motor switch protein.
   
   0.506
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
  
 
 0.503
EDZ47639.1
Haloacetate dehalogenase H-1; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
   0.480
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
  
 0.456
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.