STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDZ48113.1Oxidoreductase, FAD/FMN-binding family; [O] COG0492 Thioredoxin reductase. (675 aa)    
Predicted Functional Partners:
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
  
 0.999
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
  
 0.988
etfB
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 0.983
etfA
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
 
 0.979
EDZ46301.1
FwdC/FmdC family protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C.
  
 0.970
EDZ47996.1
Class II glutamine amidotransferase, putative; [E] COG0367 Asparagine synthase (glutamine-hydrolyzing).
  
 0.970
EDZ45023.1
[E] COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family.
  
 0.955
RBY4I_471
Glutamate synthase family protein; [F] COG0516 IMP dehydrogenase/GMP reductase; Belongs to the glutamate synthase family.
  
 0.955
RBY4I_269
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit domain protein; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
   
 0.952
EDZ48631.1
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit domain protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
   
 0.952
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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