STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phnMPhosphonate metabolism protein PhnM; [F] COG0044 Dihydroorotase and related cyclic amidohydrolases. (380 aa)    
Predicted Functional Partners:
phnL
Phosphonate C-P lyase system protein PhnL; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.989
EDZ48131.1
Phosphonate C-P lyase system protein PhnH; [P] COG3625 Uncharacterized enzyme of phosphonate metabolism.
 
 
 0.976
phnG
Phosphonate C-P lyase system protein PhnG; [P] COG3624 Uncharacterized enzyme of phosphonate metabolism.
 
 
 0.975
EDZ47744.1
[P] COG3626 Uncharacterized enzyme of phosphonate metabolism.
 
 
 0.972
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 
 0.970
EDZ46318.1
Phosphonate metabolism, 1,5-bisphosphokinase (prpp-forming) phnn; [F] COG0194 Guanylate kinase.
  
 0.934
phnK
Phosphonate C-P lyase system protein PhnK; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
  
 0.918
RBY4I_879
Putative phosphonate metabolism protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.901
phnF
Phosphonates metabolism transcriptional regulator PhnF; [K] COG2186 Transcriptional regulators.
 
  
 0.839
phnD
[P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
 
  
 0.770
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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