STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBY4I_337Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (216 aa)    
Predicted Functional Partners:
RBY4I_720
Transferase hexapeptide repeat; [R] COG0110 Acetyltransferase (isoleucine patch superfamily).
  
 
 0.940
EDZ48634.1
Sulphate transporter; [R] COG2252 Permeases.
 
 
 0.868
RBY4I_7
Transporter, formate/nitrate family; [P] COG2116 Formate/nitrite family of transporters.
  
    0.852
RBY4I_128
[R] COG2252 Permeases.
 
 
 0.789
EDZ44932.1
[S] COG3002 Uncharacterized protein conserved in bacteria; Belongs to the UPF0753 family.
  
    0.775
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.771
EDZ48438.1
Conserved hypothetical protein.
       0.629
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 
 0.560
EDZ48078.1
SlyX protein, putative.
  
     0.510
pepA_2
[E] COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.491
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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