EDZ48169.1 protein (Rhodobacterales bacterium Y4I)

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EDZ48169.1

ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (602 aa)

Predicted Functional Partners:

rplC

0.922

rplU

0.922

rplM

0.921

rpsO

0.921

rpsC

0.921

rpsG

0.919

rplT

0.918

rplR

0.917

rpmH

0.917

rpmC

0.916

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ48169.1	rplC	RBY4I_3389	RBY4I_3493	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.922
EDZ48169.1	rplM	RBY4I_3389	RBY4I_1131	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.921
EDZ48169.1	rplR	RBY4I_3389	RBY4I_1382	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.917
EDZ48169.1	rplT	RBY4I_3389	RBY4I_3899	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.918
EDZ48169.1	rplU	RBY4I_3389	RBY4I_3551	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.922
EDZ48169.1	rpmC	RBY4I_3389	RBY4I_1257	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	[J] COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.916
EDZ48169.1	rpmH	RBY4I_3389	RBY4I_956	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	[J] COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.917
EDZ48169.1	rpsC	RBY4I_3389	RBY4I_3776	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.921
EDZ48169.1	rpsG	RBY4I_3389	RBY4I_314	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.919
EDZ48169.1	rpsO	RBY4I_3389	RBY4I_1944	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.921
rplC	EDZ48169.1	RBY4I_3493	RBY4I_3389	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ABC transporter, ATP-binding protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	0.922
rplC	rplM	RBY4I_3493	RBY4I_1131	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	RBY4I_3493	RBY4I_1382	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplT	RBY4I_3493	RBY4I_3899	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplC	rplU	RBY4I_3493	RBY4I_3551	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmC	RBY4I_3493	RBY4I_1257	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	[J] COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplC	rpmH	RBY4I_3493	RBY4I_956	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	[J] COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.990
rplC	rpsC	RBY4I_3493	RBY4I_3776	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsG	RBY4I_3493	RBY4I_314	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplC	rpsO	RBY4I_3493	RBY4I_1944	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999