STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_340Conserved hypothetical protein. (191 aa)    
Predicted Functional Partners:
EDZ46246.1
Conserved hypothetical protein; [R] COG3926 Putative secretion activating protein.
 
    0.960
phaP
Phasin, PhaP; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.721
EDZ48769.1
Lipoprotein, putative; [S] COG3147 Uncharacterized protein conserved in bacteria.
  
     0.721
RBY4I_394
Conserved hypothetical protein.
  
     0.719
EDZ46889.1
Peptidoglycan-binding domain 1; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.709
EDZ48400.1
Conserved hypothetical protein.
  
     0.704
EDZ48030.1
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
       0.673
ccmF
Cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor.
       0.673
EDZ47115.1
Conserved hypothetical protein.
  
     0.671
EDZ46536.1
Conserved hypothetical protein.
  
     0.638
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.