STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA-2Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (359 aa)    
Predicted Functional Partners:
potF
Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.995
RBY4I_456
Binding-protein-dependent transport systems inner membrane component; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 0.987
potI
Putrescine ABC transporter, permease protein; [P] COG1178 ABC-type Fe3+ transport system, permease component.
 
 0.982
RBY4I_404
Binding-protein-dependent transport systems inner membrane component; [P] COG1178 ABC-type Fe3+ transport system, permease component; overlaps another CDS with the same product name.
 0.929
nosF
ABC transporter, ATP-binding protein NosF; [G] COG1129 ABC-type sugar transport system, ATPase component.
 
  
 
0.920
EDZ46265.1
[E] COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 0.916
potA
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
  
 
0.909
EDZ48191.1
Binding-protein-dependent transport systems inner membrane component; [P] COG1178 ABC-type Fe3+ transport system, permease component; overlaps another CDS with the same product name.
 
 
 0.899
EDZ47997.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
     
0.891
RBY4I_345
Binding-protein-dependent transport systems inner membrane component; [P] COG1178 ABC-type Fe3+ transport system, permease component.
 
 0.887
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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