STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacB[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4). (494 aa)    
Predicted Functional Partners:
EDZ46514.1
Peptidoglycan glycosyltransferase; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
  
 0.824
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.816
mrdA
Penicillin-binding protein 2; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
  
 0.815
EDZ46569.1
Penicillin-binding protein, 1A family; [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
  
 0.807
pbpC
Penicillin-binding protein 1C; [M] COG0744 Membrane carboxypeptidase (penicillin-binding protein).
   
 
 0.781
dacC
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.773
EDZ46627.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.765
RBY4I_994
[S] COG3159 Uncharacterized protein conserved in bacteria.
  
     0.713
EDZ47141.1
Conserved hypothetical protein.
  
     0.691
EDZ47314.1
beta-N-acetylhexosaminidase; [G] COG1472 Beta-glucosidase-related glycosidases.
  
  
 0.639
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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