STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48212.1Transcriptional regulator, LuxR family, putative; [K] COG2771 DNA-binding HTH domain-containing proteins. (242 aa)    
Predicted Functional Partners:
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.932
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.848
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
   
 0.848
RBY4I_541
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.848
EDZ48440.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 0.839
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
  
 0.793
EDZ45997.1
Sensory box histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.694
RBY4I_194
Periplasmic sensor hybrid histidine kinase; [T] COG0784 FOG: CheY-like receiver.
   
 0.694
EDZ47122.1
Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase.
   
 0.694
EDZ47184.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.694
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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