STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48221.1CBS domain protein; [R] COG1253 Hemolysins and related proteins containing CBS domains. (436 aa)    
Predicted Functional Partners:
EDZ46568.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.668
EDZ47197.1
BT1 family; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.655
recJ
single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease.
      0.603
xerC-2
Phage integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.581
RBY4I_501
Conserved hypothetical protein.
       0.553
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.540
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.540
EDZ48014.1
[O] COG0555 ABC-type sulfate transport system, permease component.
 
      0.514
EDZ48661.1
Glycine cleavage T-protein (aminomethyl transferase); [C] COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the GcvT family.
       0.447
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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