STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menCO-succinylbenzoic acid synthetase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). (377 aa)    
Predicted Functional Partners:
EDZ46793.1
Chorismate synthase; [S] COG3375 Uncharacterized conserved protein.
     0.975
RBY4I_134
Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.845
EDZ46060.1
SIS domain protein; [K] COG1737 Transcriptional regulators.
 
     0.826
EDZ46559.1
Polar amino acid ABC transporter, inner membrane subunit; [E] COG0765 ABC-type amino acid transport system, permease component.
 
     0.703
EDZ47936.1
[E] COG0765 ABC-type amino acid transport system, permease component.
 
     0.684
EDZ47615.1
[P] COG1135 ABC-type metal ion transport system, ATPase component.
       0.628
RBY4I_582
[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
     0.619
EDZ46368.1
[E] COG3938 Proline racemase; Belongs to the proline racemase family.
    
 0.611
EDZ47304.1
[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
 
  0.477
pcaH
[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
  
 
 0.423
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.