STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48268.1Antibiotic biosynthesis monooxygenase domain protein; [S] COG1359 Uncharacterized conserved protein. (97 aa)    
Predicted Functional Partners:
RBY4I_729
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
 
    0.947
EDZ47257.1
Conserved hypothetical protein TIGR00275; [R] COG2081 Predicted flavoproteins.
       0.581
EDZ47159.1
Peptidoglycan-binding LysM; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
    0.560
RBY4I_747
Peptidoglycan-binding LysM; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
    0.418
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.