STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48302.1Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators. (123 aa)    
Predicted Functional Partners:
hpcD
[E] COG3232 5-carboxymethyl-2-hydroxymuconate isomerase.
 
   
 0.878
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase; [E] COG0346 Lactoylglutathione lyase and related lyases.
 
     0.757
hpaE
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Belongs to the aldehyde dehydrogenase family.
 
     0.735
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; [Q] COG3971 2-keto-4-pentenoate hydratase.
 
     0.724
EDZ47261.1
N-6 Adenine-specific DNA methylase; [S] COG5441 Uncharacterized conserved protein.
  
     0.591
EDZ47033.1
Bordetella uptake gene product superfamily; [S] COG3181 Uncharacterized protein conserved in bacteria.
  
     0.588
EDZ46296.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
     0.581
EDZ46838.1
Conserved hypothetical protein.
  
     0.574
soxD_2
[C] COG3474 Cytochrome c2.
   
 
  0.488
EDZ46054.1
[G] COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.487
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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