STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48310.1Conserved hypothetical protein; [U] COG4961 Flp pilus assembly protein TadG. (550 aa)    
Predicted Functional Partners:
EDZ45996.1
TadE-like protein; [U] COG4961 Flp pilus assembly protein TadG.
 
    0.964
EDZ48129.1
Conserved hypothetical protein.
 
     0.953
EDZ47142.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Heme NO binding, putative.
   
    0.848
cpaB
[U] COG3745 Flp pilus assembly protein CpaB.
 
    0.846
RBY4I_855
Response regulator receiver protein; [D] COG0489 ATPases involved in chromosome partitioning.
 
  
 0.836
EDZ46319.1
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
   
    0.831
RBY4I_609
Type II secretion system protein; [NU] COG2064 Flp pilus assembly protein TadC.
 
  
 0.786
EDZ47668.1
Type II/IV secretion system protein, TadC subfamily; [NU] COG2064 Flp pilus assembly protein TadC.
 
    0.727
RBY4I_327
Divergent polysaccharide deacetylase family; [L] COG2812 DNA polymerase III, gamma/tau subunits.
  
     0.727
EDZ48450.1
Lipoprotein, putative; [M] COG3064 Membrane protein involved in colicin uptake.
  
    0.719
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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