STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48343.1Conserved hypothetical protein. (200 aa)    
Predicted Functional Partners:
RBY4I_172
Polysaccharide deacetylase; [S] COG3195 Uncharacterized protein conserved in bacteria.
    
  0.823
EDZ46336.1
Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.586
mclA_2
[G] COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
       0.572
EDZ47252.1
Conserved hypothetical protein.
  
     0.520
EDZ48385.1
SH3, type 3.
  
     0.475
uraH
Hydroxyisourate hydrolase; [R] COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
    
  0.461
EDZ48456.1
Conserved hypothetical protein; [S] COG3904 Predicted periplasmic protein.
  
     0.445
EDZ46009.1
[R] COG3173 Predicted aminoglycoside phosphotransferase.
  
     0.408
EDZ47319.1
Glyoxalase family protein; [R] COG3324 Predicted enzyme related to lactoylglutathione lyase.
  
     0.401
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.