STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDZ48364.1Cytochrome c oxidase subunit iv. cytochrome c oxidase subunit iv; [S] COG5605 Predicted small integral membrane protein. (123 aa)    
Predicted Functional Partners:
EDZ46120.1
[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
  
  0.991
EDZ46241.1
[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
  
  0.978
ctaD_2
[P] COG3256 Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.
 
  
  0.960
EDZ46566.1
[C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
 
  
  0.940
soxD_2
[C] COG3474 Cytochrome c2.
    
  0.776
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
    
  0.614
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
  0.535
EDZ46186.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.535
ctaD_1
[O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
  0.531
EDZ48239.1
[C] COG2857 Cytochrome c1.
     
 0.522
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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