STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctpAPeptidase family S41; [R] COG3975 Predicted protease with the C-terminal PDZ domain; Belongs to the peptidase S41A family. (446 aa)    
Predicted Functional Partners:
RBY4I_604
Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase.
  
  
 0.929
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.838
EDZ47338.1
Hypothetical protein; [P] COG0155 Sulfite reductase, beta subunit (hemoprotein); tetratricopeptide TPR_2.
    
 
 0.800
rppH
(Di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
   
 0.780
EDZ46289.1
NLP/P60; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
    
 
 0.754
EDZ47907.1
Hypothetical protein.
  
 
 0.697
EDZ48717.1
Hypothetical protein; [R] COG0457 FOG: TPR repeat; tetratricopeptide TPR_2.
  
 
 0.697
RBY4I_679
Hypothetical protein.
  
 
 0.697
EDZ47445.1
Conserved hypothetical protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
    
 
 0.686
rseP
RIP metalloprotease RseP; [M] COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
  
 0.588
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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