STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48441.1Ornithine decarboxylase, putative; [E] COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (383 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
 0.784
EDZ46229.1
Transcriptional regulator, AsnC family; [K] COG1522 Transcriptional regulators.
 
     0.759
EDZ47900.1
NAD(P)H dehydrogenase, quinone family; [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B).
    
  0.749
RBY4I_45
Hypothetical protein; [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NAD.
    
  0.749
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.736
EDZ46615.1
[E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
 
 0.690
rocF
Arginase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.684
EDZ46167.1
[R] COG0388 Predicted amidohydrolase.
    
 0.678
RBY4I_945
[S] COG3673 Uncharacterized conserved protein.
       0.643
RBY4I_921
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain, putative; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
       0.623
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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