STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdR_1HsdR; [V] COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (158 aa)    
Predicted Functional Partners:
hsdR_2
HsdR; [V] COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
 
     0.976
EDZ47834.1
[V] COG0732 Restriction endonuclease S subunits.
 
  
 0.913
hsdM
[V] COG0286 Type I restriction-modification system methyltransferase subunit.
 
  
 0.874
EDZ46205.1
Type I site-specific deoxyribonuclease chain S; [V] COG0732 Restriction endonuclease S subunits.
  
  
 0.649
EDZ45898.1
Type III restriction enzyme, res subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.535
EDZ48655.1
[L] COG2801 Transposase and inactivated derivatives.
  
    0.501
EDZ46473.1
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
  
    0.410
EDZ47319.1
Glyoxalase family protein; [R] COG3324 Predicted enzyme related to lactoylglutathione lyase.
  
     0.408
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
  
     0.405
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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