STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48448.1Transposase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (397 aa)    
Predicted Functional Partners:
EDZ46694.1
[L] COG0582 Integrase; Belongs to the 'phage' integrase family.
     0.970
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.814
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
    
 0.684
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
    
 0.668
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
 0.656
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.647
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
   
 0.647
RBY4I_541
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.647
EDZ48440.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
    
 0.608
cysC
ATP-sulfurylase family; Catalyzes the synthesis of activated sulfate.
   
 
  0.607
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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