STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_37Opine oxidase subunit A; [O] COG0492 Thioredoxin reductase. (464 aa)    
Predicted Functional Partners:
RBY4I_40
Opine oxidase subunit B; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 0.985
RBY4I_4
Proline dehydrogenase, alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 
  0.979
EDZ47983.1
FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 0.914
RBY4I_50
DctQ; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.882
RBY4I_3
DctP; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.879
EDZ47215.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.842
RBY4I_14
Endoribonuclease L-PSP family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
 
    0.829
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
    
 0.811
EDZ47575.1
Cytochrome c family protein.
   
 0.808
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
  0.804
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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