STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48488.1Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (252 aa)    
Predicted Functional Partners:
EDZ46353.1
periplasmiC nitrate reductase c-type cytochrome, NapC/NirT family; [C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit.
 
 
 0.860
RBY4I_370
[M] COG2825 Outer membrane protein.
    
 
 0.816
RBY4I_421
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.701
EDZ46335.1
Cell division protease FtsH, putative; [O] COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
  
     0.630
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
  
     0.618
EDZ45848.1
Putative site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family.
  
    0.610
EDZ47834.1
[V] COG0732 Restriction endonuclease S subunits.
  
    0.610
EDZ46872.1
ATP-dependent Zn protease, putative; [O] COG0464 ATPases of the AAA+ class.
  
     0.587
RBY4I_41
Transcriptional Regulator, AraC family, putative; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.581
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.571
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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