STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_372Putative K+-dependent Na+/Ca+ exchanger; [P] COG0530 Ca2+/Na+ antiporter. (320 aa)    
Predicted Functional Partners:
EDZ45957.1
Peptidase S49; [OU] COG0616 Periplasmic serine proteases (ClpP class).
       0.791
RBY4I_298
Hypothetical protein.
       0.791
RBY4I_426
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
    
  0.711
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.607
kdsD
Arabinose 5-phosphate isomerase; [R] COG0517 FOG: CBS domain; Belongs to the SIS family. GutQ/KpsF subfamily.
    
 0.591
EDZ46917.1
ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
  
   0.524
RBY4I_986
[V] COG0842 ABC-type multidrug transport system, permease component.
       0.471
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
  
    0.421
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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