STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_378OmpA domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (310 aa)    
Predicted Functional Partners:
RBY4I_205
OmpA family protein; [N] COG1360 Flagellar motor protein.
 
 0.920
EDZ46168.1
OmpA/MotB; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 0.880
EDZ48332.1
Acetyltransferase, gnat family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
 
   0.871
EDZ46338.1
Molybdopterin binding domain; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA.
       0.831
EDZ47426.1
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.791
EDZ46507.1
Polysaccharide biosynthesis/export protein; [M] COG0797 Lipoproteins.
   
  0.742
RBY4I_325
OmpA/MotB; [N] COG1360 Flagellar motor protein.
   
 0.738
pal
OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.716
EDZ47510.1
Putative outer membrane protein; [M] COG3637 Opacity protein and related surface antigens.
  
  0.713
RBY4I_196
OmpA/MotB domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.708
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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