STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_379Conserved hypothetical protein. (478 aa)    
Predicted Functional Partners:
RBY4I_420
core-2/I-branching enzyme family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     0.980
EDZ47874.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.950
EDZ46782.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.879
EDZ47038.1
ABC transporter, permease protein.
 
     0.787
EDZ46740.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.775
kpsE
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
     0.771
EDZ47827.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.770
kpsS
[M] COG3562 Capsule polysaccharide export protein.
  
     0.770
EDZ48665.1
Conserved hypothetical protein.
  
     0.769
RBY4I_576
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.769
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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