STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_381Signal transduction histidine kinase regulating citrate/malate metabolism. (177 aa)    
Predicted Functional Partners:
glyQ
[J] COG0752 Glycyl-tRNA synthetase, alpha subunit.
 
 0.999
glyS
[J] COG0751 Glycyl-tRNA synthetase, beta subunit.
      0.871
EDZ46889.1
Peptidoglycan-binding domain 1; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
 
     0.833
EDZ47327.1
Conserved hypothetical protein; [S] COG5488 Integral membrane protein.
  
     0.769
EDZ46536.1
Conserved hypothetical protein.
  
     0.753
EDZ47626.1
Conserved hypothetical protein.
  
     0.732
EDZ48496.1
Conserved hypothetical protein; [S] COG5462 Predicted secreted (periplasmic) protein.
  
     0.724
EDZ46032.1
Conserved hypothetical protein.
  
     0.722
EDZ46612.1
Lipoprotein, putative.
  
     0.720
phaP
Phasin, PhaP; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.717
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.