STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48761.1Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits. (721 aa)    
Predicted Functional Partners:
RBY4I_706
[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
 
 0.979
EDZ45942.1
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
 
     0.913
cysC
ATP-sulfurylase family; Catalyzes the synthesis of activated sulfate.
  
 
 0.899
EDZ48235.1
Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.
 
     0.898
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
    
 0.841
EDZ48547.1
Trap dicarboxylate transporter- dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.839
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
    
 0.821
EDZ45991.1
Putative trap-type c4-dicarboxylate transport system, small permease component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.802
sdhA
Succinate dehydrogenase, flavoprotein subunit; [H] COG0029 Aspartate oxidase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.781
EDZ45949.1
Invasion protein IbeA; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
 0.781
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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