STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48769.1Lipoprotein, putative; [S] COG3147 Uncharacterized protein conserved in bacteria. (303 aa)    
Predicted Functional Partners:
holB
[L] COG2812 DNA polymerase III, gamma/tau subunits.
 
     0.808
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.775
dacC
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.775
EDZ48450.1
Lipoprotein, putative; [M] COG3064 Membrane protein involved in colicin uptake.
 
     0.772
RBY4I_394
Conserved hypothetical protein.
  
     0.767
EDZ47756.1
Peptidase A24A, prepilin type IV; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
 
     0.765
EDZ46625.1
Conserved hypothetical protein.
  
     0.762
EDZ47115.1
Conserved hypothetical protein.
  
     0.750
RBY4I_738
Conserved hypothetical protein.
  
     0.749
RBY4I_679
Hypothetical protein.
 
     0.745
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.