STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_400Glycosyl transferase, group 1/2 family protein; [M] COG0438 Glycosyltransferase. (354 aa)    
Predicted Functional Partners:
EDZ47964.1
Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
 
 0.848
EDZ48691.1
Sulfotransferase, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
   0.811
EDZ46933.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
  
 
 0.698
EDZ47275.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.633
EDZ48727.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.633
EDZ48350.1
UDP-galactose-lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.606
EDZ47516.1
Undecaprenyl-phosphate galactose phosphotransferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.601
EDZ46696.1
Succinoglycan biosynthesis transport protein ExoP, putative; [D] COG2894 Septum formation inhibitor-activating ATPase.
 
 
 0.583
EDZ47192.1
Conserved hypothetical protein.
     
  0.567
EDZ46964.1
Conserved hypothetical protein.
       0.539
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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