STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBY4I_403[R] COG4666 TRAP-type uncharacterized transport system, fused permease components. (516 aa)    
Predicted Functional Partners:
EDZ47563.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.962
RBY4I_980
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.910
EDZ47760.1
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.793
EDZ48547.1
Trap dicarboxylate transporter- dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.586
dctM
trapT family, DctM subunit, C4-dicarboxylate transport; [C] COG3069 C4-dicarboxylate transporter.
  
  
 
0.438
EDZ47288.1
[R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
  
  
 
0.431
EDZ46190.1
Trap dicarboxylate transporter, dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
  
  
 
0.430
RBY4I_59
DctM; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
  
  
 
0.416
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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