STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ44957.1Trap transporter solute receptor, taxi family; [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component. (336 aa)    
Predicted Functional Partners:
EDZ44999.1
Trap transporter, 4tm/12tm fusion protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.992
RBY4I_788
TRAP transporter, 4TM/12TM fusion protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
    0.853
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
     
  0.735
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
     
  0.735
EDZ44976.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.522
EDZ44947.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.516
EDZ44960.1
Oxidoreductase, FAD-binding; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.489
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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