STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ44964.1Putative TonB protein; [RTKL] COG0515 Serine/threonine protein kinase. (276 aa)    
Predicted Functional Partners:
EDZ44911.1
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
 
 
 0.995
EDZ44875.1
MotA/TolQ/ExbB proton channel; [U] COG0811 Biopolymer transport proteins.
 
 
 0.991
EDZ44945.1
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
 
 
 0.990
tolR
Protein TolR; [U] COG0848 Biopolymer transport protein.
  
 
 0.925
EDZ47383.1
Lipoprotein, putative.
    
   0.908
RBY4I_143
Biopolymer transport protein, ExbD/TolR family, putative; [U] COG0848 Biopolymer transport protein.
  
 
 0.905
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.904
RBY4I_173
MotA/TolQ/ExbB proton channel; [U] COG0811 Biopolymer transport proteins.
 
 
 0.902
RBY4I_199
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
 
 
 0.888
EDZ44926.1
Outer membrane receptor, TonB dependent; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.869
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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