STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EDZ44981.1[R] COG1064 Zn-dependent alcohol dehydrogenases. (326 aa)    
Predicted Functional Partners:
gno
Gluconate 5-dehydrogenase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
  0.954
EDZ44954.1
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.922
EDZ44872.1
Trap dicarboxylate transporter, dctm subunit; [Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  
  0.894
hisD_3
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
     0.881
EDZ44962.1
Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
   
 0.857
EDZ44910.1
Transcriptional regulator, LacI family; [K] COG1609 Transcriptional regulators.
 
 
   0.839
EDZ46376.1
Dehydrogenase E1 component family; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
  
 
 0.807
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
 
  
 0.795
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
  
 0.763
EDZ44917.1
UspA; [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
     0.718
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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