STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ44999.1Trap transporter, 4tm/12tm fusion protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (741 aa)    
Predicted Functional Partners:
EDZ44957.1
Trap transporter solute receptor, taxi family; [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component.
 
  0.992
EDZ46415.1
Trap transporter solute receptor, taxi family; [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component.
    0.897
EDZ44947.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.799
EDZ44960.1
Oxidoreductase, FAD-binding; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.773
RBY4I_59
DctM; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
  
     0.489
EDZ44992.1
Aminotransferase, class V; [E] COG0520 Selenocysteine lyase.
       0.447
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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