STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_421Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (247 aa)    
Predicted Functional Partners:
RBY4I_451
TPR domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
    0.867
EDZ47767.1
Conserved hypothetical protein.
  
 0.819
EDZ47712.1
[P] COG3119 Arylsulfatase A and related enzymes.
 
     0.813
EDZ47951.1
Conserved hypothetical protein.
  
 0.791
napD_1
Nonspecific acid phosphatase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.788
EDZ46102.1
Outer membrane porin.
   
 0.757
EDZ46507.1
Polysaccharide biosynthesis/export protein; [M] COG0797 Lipoproteins.
     
  0.729
RBY4I_370
[M] COG2825 Outer membrane protein.
    
 
 0.715
EDZ46313.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
 0.713
EDZ48488.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.701
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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