STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_423Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (182 aa)    
Predicted Functional Partners:
rhlE
[LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
 
 
 0.936
RBY4I_487
Conserved hypothetical protein.
  
 0.931
hrpB
ATP-dependent helicase HrpB; [LKJ] COG0513 Superfamily II DNA and RNA helicases.
   
 0.928
EDZ47192.1
Conserved hypothetical protein.
   
  0.925
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.919
deaD
RNA helicase DeaD; [LKJ] COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
 
 
 0.911
EDZ48295.1
Redoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.910
EDZ47373.1
Periplasmic protein thiol; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.905
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 0.901
EDZ48140.1
Translation elongation factor EF-G; [J] COG4108 Peptide chain release factor RF-3.
   
 0.901
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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