STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_424Conserved hypothetical protein. (618 aa)    
Predicted Functional Partners:
RBY4I_150
[S] COG3501 Uncharacterized protein conserved in bacteria.
  
  0.875
EDZ47993.1
Transposase, putative; [L] COG2801 Transposase and inactivated derivatives.
 
     0.809
EDZ47271.1
Transposition protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.787
EDZ47218.1
Conserved hypothetical protein.
  
  
  0.720
RBY4I_198
Paar repeat-containing protein; [S] COG4104 Uncharacterized conserved protein.
     
  0.668
EDZ47953.1
[M] COG3209 Rhs family protein; RHS Repeat family.
  
 
  0.558
RBY4I_398
Phage integrase family protein; [L] COG0582 Integrase.
  
    0.556
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.490
RBY4I_487
Conserved hypothetical protein.
  
     0.428
EDZ48095.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.424
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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