STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
paaFphenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (436 aa)    
Predicted Functional Partners:
paaD
Phenylacetic acid degradation protein PaaD; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
 
 0.974
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 
 
 0.825
paaG
phenylacetate-CoA oxygenase, PaaG subunit; [S] COG3396 Uncharacterized conserved protein.
 
 
 0.813
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
 
 0.783
paaH
phenylacetate-CoA oxygenase, PaaH subunit; [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism.
 
 
 0.781
paaI
phenylacetate-CoA oxygenase, PaaI subunit; [S] COG3396 Uncharacterized conserved protein.
 
 
 0.776
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
  
 0.767
paaB
Phenylacetate degradation probable enoyl-CoA hydratase paaB; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
  
 0.756
RBY4I_910
Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator.
       0.731
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.641
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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