STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_432Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators. (230 aa)    
Predicted Functional Partners:
EDZ47870.1
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
  
     0.769
EDZ47963.1
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
  
     0.768
EDZ47875.1
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
  
     0.691
pdhR
Pyruvate dehydrogenase complex repressor; [K] COG1802 Transcriptional regulators.
  
  
 0.618
EDZ47393.1
Conserved hypothetical protein.
       0.478
hemK
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.418
EDZ44968.1
Acetolactate synthase large subunit; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
  
     0.401
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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