STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpCPenicillin-binding protein 1C; [M] COG0744 Membrane carboxypeptidase (penicillin-binding protein). (602 aa)    
Predicted Functional Partners:
EDZ45820.1
Alpha-2-macroglobulin N-terminal domain family protein; [R] COG2373 Large extracellular alpha-helical protein.
   
 0.923
EDZ46627.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
  
0.796
EDZ46569.1
Penicillin-binding protein, 1A family; [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
  
0.794
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 
0.785
dacB
[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
   
 
 0.781
mrdA
Penicillin-binding protein 2; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.772
EDZ46514.1
Peptidoglycan glycosyltransferase; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.772
dacC
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.743
EDZ47944.1
Hydratase/decarboxylase; [Q] COG3971 2-keto-4-pentenoate hydratase.
       0.689
dacF
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.514
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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