STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_437Conserved hypothetical protein. (54 aa)    
Predicted Functional Partners:
ctaG
Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
  
    0.851
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
  
    0.843
EDZ46186.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
  
    0.822
EDZ48683.1
Surf1 family protein; [S] COG3346 Uncharacterized conserved protein.
  
    0.621
RBY4I_536
Conserved domain protein.
  
     0.612
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
    0.593
EDZ46719.1
[R] COG0612 Predicted Zn-dependent peptidases; Belongs to the peptidase M16 family.
       0.571
rimJ
[J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
       0.571
thrC
[E] COG0498 Threonine synthase.
       0.571
RBY4I_643
Peptidase U62, modulator of DNA gyrase; [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
       0.520
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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