STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBY4I_443Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases. (303 aa)    
Predicted Functional Partners:
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
  
 0.868
soxX
Monoheme Cytochrome c SoxX.
  
     0.705
EDZ47139.1
Tat pathway signal sequence domain protein; [S] COG3108 Uncharacterized protein conserved in bacteria.
  
    0.690
EDZ45817.1
Response regulator receiver protein, putative; [K] COG2771 DNA-binding HTH domain-containing proteins.
    
   0.674
RBY4I_896
Transcriptional regulator, LuxR family; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
    
   0.674
soxD_2
[C] COG3474 Cytochrome c2.
 
   
 0.662
soxS
Regulatory protein SoxS.
  
     0.643
EDZ46744.1
Conserved hypothetical protein; [P] COG0607 Rhodanese-related sulfurtransferase.
   
  0.639
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
    
 0.628
soxW
[O] COG2143 Thioredoxin-related protein.
 
     0.627
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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