STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_444Adenylate cyclase Cya3; [R] COG0457 FOG: TPR repeat. (582 aa)    
Predicted Functional Partners:
RBY4I_814
Tetratricopeptide repeat domain protein; [J] COG0172 Seryl-tRNA synthetase.
 
0.979
EDZ47192.1
Conserved hypothetical protein.
   
 0.953
RBY4I_487
Conserved hypothetical protein.
  
 0.948
RBY4I_796
Cyclic nucleotide-binding domain protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
 0.945
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.938
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.926
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
   
 0.926
RBY4I_541
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.926
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 0.924
EDZ47235.1
Adenylyl cyclase class-3/4/guanylyl cyclase; [R] COG0457 FOG: TPR repeat.
 
0.921
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (18%) [HD]