STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_445Allergen V5/Tpx-1 family protein; [S] COG2340 Uncharacterized protein with SCP/PR1 domains. (171 aa)    
Predicted Functional Partners:
EDZ47858.1
Twin-arginine translocation pathway signal; [S] COG1376 Uncharacterized protein conserved in bacteria.
 
     0.780
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
    
  0.717
EDZ47453.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
  0.717
RBY4I_385
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
  0.717
EDZ47075.1
Conserved hypothetical protein.
  
     0.683
EDZ47436.1
Conserved hypothetical protein.
  
     0.637
EDZ48426.1
Membrane protein involved in colicin uptake; [S] COG2268 Uncharacterized protein conserved in bacteria.
  
    0.616
RBY4I_592
ErfK/YbiS/YcfS/YnhG; [S] COG1376 Uncharacterized protein conserved in bacteria.
 
     0.562
EDZ47141.1
Conserved hypothetical protein.
  
     0.560
EDZ45866.1
Inner-membrane translocator; [R] COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.542
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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