STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_451TPR domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (647 aa)    
Predicted Functional Partners:
napD_1
Nonspecific acid phosphatase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.903
EDZ47712.1
[P] COG3119 Arylsulfatase A and related enzymes.
 
   
 0.886
RBY4I_421
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
    0.867
EDZ48101.1
Conserved hypothetical protein.
   
 0.848
RBY4I_757
Tail tape measure protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
 0.754
EDZ46440.1
Protein in ptx operon 5'region; [GEPR] COG0477 Permeases of the major facilitator superfamily.
    
   0.732
EDZ46436.1
[R] COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
   
   0.725
EDZ48262.1
[S] COG3126 Uncharacterized protein conserved in bacteria.
  
     0.723
EDZ46004.1
Conserved hypothetical protein.
    
 0.719
EDZ46704.1
Conserved hypothetical protein.
   
  0.648
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.