STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RBY4I_453Protozoan/cyanobacterial globin family protein; [R] COG2346 Truncated hemoglobins. (140 aa)    
Predicted Functional Partners:
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
    
  0.768
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
  0.764
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
    
  0.510
EDZ48440.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
     
  0.492
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
    
  0.486
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
     
  0.481
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
     
  0.481
RBY4I_541
Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
     
  0.481
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
       0.428
EDZ48716.1
Rrf2 family protein; [O] COG1076 DnaJ-domain-containing proteins 1.
 
    0.407
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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