STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_46Efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump. (400 aa)    
Predicted Functional Partners:
EDZ48071.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 0.978
RBY4I_63
Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.967
RBY4I_64
ABC transporter, inner membrane subunit; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.946
EDZ45003.1
RND efflux system, outer membrane lipoprotein, NodT family; [MU] COG1538 Outer membrane protein.
  
 0.939
EDZ46571.1
Outer membrane efflux protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.931
EDZ48507.1
Permease, putative; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
 0.928
EDZ48715.1
Secretion protein HlyD; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.927
EDZ47107.1
RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.897
RBY4I_467
RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.897
RBY4I_866
RND transporter, HAE1 family; [V] COG0841 Cation/multidrug efflux pump.
  
 0.897
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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